Package: toxEval 1.4.2

Laura DeCicco

toxEval: Exploring Biological Relevance of Environmental Chemistry Observations

Data analysis package for estimating potential biological effects from chemical concentrations in environmental samples. Included are a set of functions to analyze, visualize, and organize measured concentration data as it relates to user-selected chemical-biological interaction benchmark data such as water quality criteria. The intent of these analyses is to develop a better understanding of the potential biological relevance of environmental chemistry data. Results can be used to prioritize which chemicals at which sites may be of greatest concern. These methods are meant to be used as a screening technique to predict potential for biological influence from chemicals that ultimately need to be validated with direct biological assays. A description of the analysis can be found in Blackwell (2017) <doi:10.1021/acs.est.7b01613>.

Authors:Laura DeCicco [aut, cre], Steven Corsi [aut], Daniel Villeneuve [aut], Brett Blackwell [aut], Gerald Ankley [aut], Alison Appling [rev], Dalma Martinovic [rev]

toxEval_1.4.2.tar.gz
toxEval_1.4.2.zip(r-4.7)toxEval_1.4.2.zip(r-4.6)toxEval_1.4.2.zip(r-4.5)
toxEval_1.4.2.tgz(r-4.6-any)toxEval_1.4.2.tgz(r-4.5-any)
toxEval_1.4.2.tar.gz(r-4.7-any)toxEval_1.4.2.tar.gz(r-4.6-any)
toxEval_1.4.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
toxEval/json (API)

# Install 'toxEval' in R:
install.packages('toxEval', repos = c('https://doi-usgs.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/doi-usgs/toxeval/issues

On CRAN:

Conda:

toxicitywater-quality

7.32 score 22 stars 106 scripts 314 downloads 1 mentions 33 exports 91 dependencies

Last updated from:74f5164ba7. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK222
source / vignettesOK245
linux-release-x86_64OK231
macos-release-arm64OK158
macos-oldrel-arm64OK140
windows-develOK193
windows-releaseOK155
windows-oldrelOK160
wasm-releaseOK155

Exports:as.toxEvalclean_endPoint_infocreate_toxEvalcreateLinkend_point_infoendpoint_hitsendpoint_hits_DTexplore_endpointsfilter_groupsflagsget_ACCget_chemical_summaryget_concentration_summarygraph_chem_datahits_by_groupingshits_by_groupings_DThits_summaryhits_summary_DTmake_tox_mapmap_tox_dataplot_chemical_boxplotsplot_tox_boxplotsplot_tox_endpointsplot_tox_endpoints2plot_tox_heatmapplot_tox_stacksrank_sitesrank_sites_DTremove_flagsside_by_side_datatox_boxplot_datatox_chemicalsToxCast_ACC

Dependencies:base64encbslibcachemcellrangerclassclassIntclicommonmarkcpp11crayoncrosstalkDBIdigestdplyrDTe1071evaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.providerslifecyclemagrittrMASSmemoisemimeotelpillarpkgconfigpngprettyunitsprogresspromisesproxypurrrR6rappdirsrasterRColorBrewerRcppreadxlrematchrlangrmarkdowns2S7sassscalessfshinyshinyAceshinycssloadersshinydashboardsourcetoolsspstringistringrterratibbletidyrtidyselecttinytexunitsutf8vctrsviridisLitewithrwkxfunxtableyaml

Preparing toxEval Data
Introduction | Preparing the data | Data | Chemicals | Sites | Exclude | Benchmarks | Summary

Last update: 2024-12-13
Started: 2018-04-03

Chemical Names

Last update: 2024-10-02
Started: 2024-01-29

Introduction to toxEval
What is ToxCast? | Exposure-Activity Ratio | What is an "endPoint"? | What is a "group"? | Summarizing the data | Reporting bugs | Citing toxEval

Last update: 2024-10-02
Started: 2018-04-03