Package: toxEval
Type: Package
Title: Exploring Biological Relevance of Environmental Chemistry
        Observations
Version: 1.4.2
Authors@R: c(person("Laura", "DeCicco", 
                     role = c("aut","cre"),
                     email = "ldecicco@usgs.gov",
                     comment=c(ORCID="0000-0002-3915-9487")),
              person("Steven", "Corsi", 
                     role = c("aut"),
                     email = "srcorsi@usgs.gov",
                     comment=c(ORCID="0000-0003-0583-5536")),
              person("Daniel", "Villeneuve", 
                     role = c("aut"),
                     comment=c(ORCID="0000-0003-2801-0203")),
              person("Brett", "Blackwell", 
                     role = c("aut"),
                     comment=c(ORCID="0000-0003-1296-4539")), 
              person("Gerald", "Ankley", 
                     role = c("aut"),
                     comment=c(ORCID="0000-0002-9937-615X")), 
              person("Alison", "Appling", 
                     role = "rev", 
                     comment = "Reviewed for USGS"),
              person("Dalma", "Martinovic", 
                     role = "rev", 
                     comment = "Reviewed for USGS"))
Description: Data analysis package for estimating potential biological
        effects from chemical concentrations in environmental samples.
        Included are a set of functions to analyze, visualize, and
        organize measured concentration data as it relates to
        user-selected chemical-biological interaction benchmark data
        such as water quality criteria. The intent of these analyses is
        to develop a better understanding of the potential biological
        relevance of environmental chemistry data. Results can be used
        to prioritize which chemicals at which sites may be of greatest
        concern. These methods are meant to be used as a screening
        technique to predict potential for biological influence from
        chemicals that ultimately need to be validated with direct
        biological assays. A description of the analysis can be found
        in Blackwell (2017) <doi:10.1021/acs.est.7b01613>.
License: CC0
Copyright: This software is in the public domain because it contains
        materials that originally came from the United States
        Geological Survey, an agency of the United States Department of
        Interior. For more information, see the official USGS copyright
        policy at
        https://www.usgs.gov/visual-id/credit_usgs.html#copyright
Depends: R (>= 4.1.0)
Imports: dplyr, tidyr, DT (>= 0.1.24), leaflet (>= 1.0.0), ggplot2 (>=
        3.0.0), magrittr, shiny, shinydashboard, RColorBrewer, readxl,
        tools, shinyAce, shinycssloaders, utils
Suggests: rmarkdown, testthat, knitr, here, tcpl, openxlsx, covr
BugReports: https://github.com/DOI-USGS/toxEval/issues
VignetteBuilder: knitr
BuildVignettes: true
LazyLoad: yes
RoxygenNote: 7.3.3
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        make libicu-dev libpng-dev libuv1-dev libssl-dev libproj-dev
        libsqlite3-dev libudunits2-dev zlib1g-dev
Repository: https://doi-usgs.r-universe.dev
Date/Publication: 2026-01-23 19:33:13 UTC
RemoteUrl: https://github.com/doi-usgs/toxeval
RemoteRef: HEAD
RemoteSha: 74f5164ba75bddbc74237e6ae39946ded8b5daff
NeedsCompilation: no
Packaged: 2026-06-22 09:51:47 UTC; root
Author: Laura DeCicco [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3915-9487>),
  Steven Corsi [aut] (ORCID: <https://orcid.org/0000-0003-0583-5536>),
  Daniel Villeneuve [aut] (ORCID:
    <https://orcid.org/0000-0003-2801-0203>),
  Brett Blackwell [aut] (ORCID: <https://orcid.org/0000-0003-1296-4539>),
  Gerald Ankley [aut] (ORCID: <https://orcid.org/0000-0002-9937-615X>),
  Alison Appling [rev] (Reviewed for USGS),
  Dalma Martinovic [rev] (Reviewed for USGS)
Maintainer: Laura DeCicco <ldecicco@usgs.gov>